Pseudomonas aeruginosa Metabolome Database

PAMDB Version 1.0

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The PAMDB is an expertly curated database containing extensive metabolomic data and metabolic pathway diagrams about Pseudomonas aeruginosa (reference strain PAO1). PAMDB currently contains more than 4370 small molecules and 5695 proteins, including 1267 richly annotated enzymes and transporters. It also has 938 metabolic pathways. A total of 7790 reactions are also contained in the database. Each metabolite is linked to a variety of data describing the compound, its ontology, physical properties, reactions, pathways, references, external links and associated proteins or enzymes.


PAMDB is offered to the public as a freely available resource for academic purposes. Please cite the PAMDB paper in any resulting publications.

Citing PAMDB :

  1. Weiliang Huang, Luke K. Brewer, Jace W. Jones, Angela T. Nguyen, Ana Marcu, David S. Wishart, Amanda G. Oglesby-Sherrouse, Maureen A. Kane, and Angela Wilks (2018). PAMDB: a comprehensive Pseudomonas aeruginosa metabolome database. Nucleic Acids Res. 46(D1):D575-D580.    PMID: (818) 535-4860    DOI: 10.1093/nar/gkx1061